Speciation: How One Species Becomes Two

Speciation is the process by which one species evolves to form two or more new species. Often members of different species are unable to interbreed due to the evolution of reproductive isolating barriers. Exactly how to define a species is a matter of active debate among biologists, but most agree that a species is an interconnected population of organisms that have an evolutionary trajectory independent from other species. This independence is critical to the evolution and maintenance of biological diversity. Populations evolve new traits by way of natural selection, where traits that are adaptive (beneficial to the survival or reproductive output of individuals bearing them) are favored and become more common in a population. However, whether a trait is beneficial or not depends on the species it arises in. For example, while conspicuous coloration in a poisonous frog is beneficial, the same trait would be disastrous for harmless species. If all frogs were a single species this trait would be quickly purged from the population. Reproductive boundaries, formed by the process of speciation, provide a mechanism for species to evolve independently from one and another, and accumulate distinctively adaptive traits.

“Sister species” are pairs of species more closely related to one another than to any other species. Anolis krugi (left) and Anolis pulchellus (right) are sister species of grass-bush anole native to Puerto Rico. Photos by Day’s Edge Productions.

The study of speciation boils down to asking the question “where do species come from?” While speciation is a fundamental part of evolution, our knowledge of exactly how the process of speciation works is surprisingly incomplete. For many years the prevailing theory of speciation focused on isolation. In this model, populations of a single species are physically separated from one and other. This could be due to the formation of some impenetrable barrier, like a mountain or glacier, or due to dispersal, like arriving on a remote island. Once isolated, these populations evolve independent from one another, and given enough time, they will randomly accumulate enough differences to be considered distinct species. The spectacularly blue-dewlapped Anolis conspersus from Grand Cayman island is one likely example of speciation by isolation. This species’ closest relative is Anolis grahami from Jamaica. The ancestors of present-day A. conspersus arrived on Grand Cayman from Jamaica thousands or millions of generations ago and formed a new population. Over, time the Jamaican and Caymanian populations accumulated differences in isolation such that they now considered distinct species. 

The beautiful Anolis conspersus from Grand Cayman is most closely related to Anolis grahami of Jamaica. Photo by Anthony Geneva

Scientists often observe that a species and its closest relative differ in their ecology. These sister species may occupy different habitats or different structural parts of their environment. This pattern is not predicted by the isolation theory and this observation gave rise to an alternative theory of speciation where adaptation plays a central role. The theory of ecological speciation posits that speciation occurs as a side-effort of populations of a single species adapting to different habitats or environments. Adaptive evolution can proceed very rapidly, especially compared to the random accumulation of differences in the isolation theory. While there is evidence for both speciation by isolation and ecological speciation we don’t know which (or if either) are responsible for most of the species diversity on earth.  

Anoles are a great group to study speciation for a number of reasons. First, there are over 400 species of anole, so they are clearly adept at speciating. Second, many anole species appear to be in the process of speciation, for example Anolis distichus populations in Hispaniola are partially reproductively isolated from one and other. Finally third, anoles are particularly well suited to investigate which theory of speciation best fits what we see in nature. Thanks to many decades of evolutionary and functional ecology research, we have a strong grasp on what anole traits are ecologically adaptive. With this knowledge, we can use anoles to test the relative importance of isolation time and adaptive evolution in driving the process of speciation. 

Ecological differences may accelerate the speciation process. Anolis cooki and Anolis cristatellus are two Puerto Rican species that are closely related but occupy very different habitats.[/caption]

Anole Invaders

The current distribution of plants and animals around the Earth has been strongly influenced by colonization, the ability of organisms to disperse short or long distances on their way to establishing new populations. Over the past several hundred years, humans have increased the rate and distance over which organisms colonize new lands. These human-mediated introductions have reshaped basic patterns of biogeography, a field that investigates the geographical distribution of plants and animals. Some of these invaders cause ecological or economic harm in their new homes and are known as invasive species. In cases where we lack detailed study of an introduced species, we often use high local abundance and rapid spread as proxies for invasiveness. Anoles are one of the most prolific groups of invaders with over 20 different species introduced outside of their native ranges. Most anole invaders originate from Caribbean islands and introductions occur to other islands in the Caribbean, Atlantic and Pacific as well as South Florida, Central America and Southeast Asia. Researchers are studying a diverse array of topics related to anole invasions including the origin of invaders in their native ranges, patterns of introduction and spread, and impacts on native species.

The brown or festive anole (Anolis sagrei) is native to Cuba and the Bahamas, but has been introduced widely around the Caribbean, Central America, and the continental U.S., where it has spread north from the Florida Keys into several other states. Photo by Day’s Edge Productions.

In my lab, we use DNA sequences and other types of genetic data to identify the origin of introduced anoles. Where did invaders originate from in their native range? How many introductions have occurred? How have they spread in their introduced range? You can think of each anole that invades a new area as having their native-range origin encoded in their DNA as if they were carrying a passport from their home region. Using this approach on over a dozen anole species, we in most cases identified the geographic source of introductions, commonly hubs of transport and commerce, which is consistent with anoles being transported by shipping. Many of these anole introductions occurred among Caribbean islands or from Caribbean islands to South Florida. We also found that anole invasions often originate from multiple, geographically and genetically distinct populations in their native range and when thrust together in their introduced range they mix together. This has important implications for evolution, including the potential to enhance adaptation by increasing genetic variation. Our DNA studies also reveal that well-established populations in introduced range can become sources for secondary introductions, which has been termed the bridgehead effect. Brown anoles (Anolis sagrei) are a particularly good example of this phenomenon as introduced populations in South Florida around Miami are likely the source of introductions to Bermuda, Grand Cayman, Grenada, and Hawaii. Similarly, the spread of green anoles (Anolis carolinensis) in the Pacific resulted from a stepping-stone pattern among islands after introduction to the region.

The green anole (Anolis carolinensis) is native in the southeastern U.S., where it competes with the invasive brown anole (Anolis sagrei). Elsewhere in the world, the green anoles have been introduced and are themselves the invaders! Photo by Day’s Edge Productions.

Islands have played a special role in illustrating some fundamental patterns of biogeography, including the well-supported observation that smaller and more remote islands harbor fewer species. However, human-mediated dispersal has increased the occurrence of long-distance and over-water dispersal, which were relatively rare prior to human travel on the sea and in the air. Recent studies of anoles on Caribbean islands show that humans have reduced geographic isolation among islands and economic activities now strongly influence patterns of anole biogeography. Islands also provide excellent arenas for experimental investigation of the consequences of anole invasions for native species. After invasive brown anoles arrived on small islands off the Florida coast, native green anoles shifted their habitat use to higher perches, presumably to reduce competition with lower-perching brown anoles. Within a mere 20 generations, green anoles adapted to their more arboreal circumstances by evolving larger toepads, which should allow them to cling better to the more risky higher perches. This is one of the best examples of rapid evolution caused by competition between an invader and a native species. Researchers are interested in studying anole invasions to gain insight both into basic ecological and evolutionary processes, such as species interactions and adaptation, and to mitigate the negative ecological and economic impacts caused by invasive anoles.

Distribution Models for Puerto Rican Anoles under Predicted Climate Change

SDMs for (A) A. cooki, (B) A. cristatellus, (C) A. evermanni, and (D) A. gundlachi. Left images are current suitable habitat. Right images are predicted suitable habitat in 2070 under HadGEM2-AO RCP8.5. The warmer the color (the redder it is), the more suitable the habitat.

Species Distribution Models (SDMs), although relatively new compared to other ecological methods, have been built for a wide range of taxa over a variety of habitat types and regions of the world. Given their widespread use, it was surprising to Brad Lister and me that there were very few SDMs for anoles, and in particular, none for Puerto Rican anoles. Brad and I decided to model the potential suitable habitat for all ten Puerto Rican Anolis species under various climatic scenarios for the years 2050 and 2070. The results of our study showed declines in suitable habitat for nearly all ten mainland Puerto Rican anoles with the exception of Anolis cooki. Declines in suitable habitat have the potential to substantially increase extinction risks for anoles. Although this study focused on Puerto Rican anoles, it is plausible that similar climate change impacts could be seen throughout the West Indies.

Species Distribution Modeling is a rapidly developing subfield of ecology, but we found a paucity of useful information that linked all the steps together. I am now working on a step-by-step tutorial that will fill in a lot of missing information on the steps that many tutorials breeze past. For me, an important component of creating SDMs was using software with the greatest potential for widespread use and method replication. For instance, ArcGIS is exceptionally powerful, but comes with steep licensing fees. For that reason, we opted to use comparable, open-source packages QGIS and DIVA-GIS. With respect to the actual modeling software, MaxEnt is a great option with no associated cost. Additionally, although we did not use it for this paper, Wallace is a very useful platform that incorporates different algorithms (including MaxEnt) for creating SDMs in a user-friendly series of guided steps.


As a part of my doctoral research in the Akcakaya Lab at Stony Brook University, I intend to build more accurate SDMs for Puerto Rican anoles by incorporating biotic interactions and more relevant predictor variables. I am also interested in working on SDMs that output multi-species range shifts given forecasts of future climate change. With these initiatives in mind, I anticipate reporting on new developments in Anolis SDMs in the near future. In general, the study of Anolis SDMs is just beginning and many important research directions remain to be explored. As we expand the use of SDMs I think it’s useful to keep George Box’s quote in mind: “All models are wrong, but some are useful.” It’s an informative mindset to have when building and interpreting any SDM. Although they can be helpful in conservation decision making, their results are just predictions based on more predictions and we need to keep asking ourselves how those predictions can be improved.

Are Brown Anoles Pushing Greens to Extinction in Louisiana?

Festive Anoles in Panama

The brown (a.k.a. “festive”) anole, A. sagrei, is slowly making its way around the world. Latest report: Panama City, Panama!

Evolution 2019: Patterns of Morphological and Physiological Variation of Hispaniolan Anoles

We all know that the anoles of the Caribbean partition the habitat based on structural environment and microclimate, leading to patterns of correlated morphology and habitat use within these ecomorphs. While we know a substantial amount about the morphological aspect of the ecomorph concept, many questions remain concerning the patterns of physiological trait evolution across Caribbean anoles and how this relates to habitat use and ecomorphology.

Brooke Bodensteiner, a PhD student in the Muñoz lab at Virginia Tech, is digging into this topic for her doctoral research. In her presentation at Evolution 2019, Brooke told us about two key questions she is attempting to address in her research: (1) Do ecomorphs overlap in physiological trait space or do they neatly differentiate into distinct groups as they do with morphology? and (2) Do thermal traits evolutionarily respond to the same microhabitat predictors?

Brooke measured thermal physiology of anoles in the Dominican Republic, including Anolis cybotes, shown here.

Brooke is investigating these questions in Hispaniolan anoles and has so far sampled 28 of the 41 species found in the Dominican Republic with representatives from all 6 ecomorphs!  The Hispaniolan anoles are particularly good for this research topic since there are representatives of each ecomorph in very diverse habitats islandwide, providing many opportunities for physiological diversification. Building on a large dataset of morphological traits, Brooke collected thermal physiology data from all 28 of these species including critical thermal minimum and maximum and preferred temperature, to try to understand the patterns of physiological diversification and how they are correlated with morphological diversification.

Brooke’s results were fascinating, but more complex and nuanced than expected. Consequently, we will only tell you that her findings are intriguing and will give us a lot to ponder regarding patterns of correlated trait evolution and environmental factors driving physiological evolution. I look forward to seeing the finalized results published soon!

Evolution 2019: Dewlap Diversity and Population Genetic Structure in an Amazonian Anole

Dewlap variation in A. fuscoauratus. Photos by Ivan Prates.

One of the most well-known and “classic” anole traits is the dewlap, the (usually) colorful flap of skin under the chin that anoles use to display to one another. The dewlap plays a role in numerous anole interactions, including male-male and male-female displays of aggression or courtship. Throughout the Anolis genus, dewlap color and pattern are both quite variable. Dewlap color is thought to be a sign of reproductive isolation, and has been used by researchers to define and recognize species boundaries, although lots of variation within-species exists as well.

Ivan Prates, a postdoctoral fellow at the Smithsonian National Museum of Natural History, has been exploring this variation with the curious case of the Amazonian slender anole, A. fuscoauratus. The species is distributed throughout much of the Amazon, and different populations vary in dewlap color – some are white, some are yellow, and some are pink! Within each population, the dewlaps don’t appear to vary, but different populations have different dewlap colors, seemingly unpredictably. For example, two study populations that are separated by just 60km show different dewlap morphs, with one population having all yellow dewlaps, and the other having all pink. (Note: only males have dewlaps in this species).

This observation led Prates to two questions: first, does the phenotypic variation represent distinct evolutionary lineages? That is to say, are populations with the same colored dewlap more closely related to one another than to populations with different colored dewlaps? And second, what is driving the diversity in dewlap color?

To answer the first question, Prates performed RAD sequencing on a large number of populations throughout the range of A. fuscoauratus. Prates found a fair amount of genetics structure within the species, and identified areas that have experienced high levels of admixture as well. For example, the Atlantic Forest population and northern South American were genetically distinct, but populations within central Amazonia tend to be relatively admixed with one another. Interestingly, he found that this genetic structure of populations was not related to dewlap color at all. Populations with different dewlap colors were present within each of the distinct genetic clades. So each of the dewlap colors did not come from a single source population, and have instead diverged from one another seemingly at random.

So if the genetic structure does not predict the dewlap color phenotype, what does? Previous work on Greater Antillean anoles has shown that dewlap color and pattern vary across habitat types due to differences in light environment and visibility. Denser habitats are thought to lead to more reflective colors and patterns, while more open habitats lead to less reflective dewlaps. Prates therefore used climate data to assess whether environmental variables were correlated with dewlap color. Similar to the genetic results, Prates found no association between climate variables and dewlap color.

What about species interactions? Previous work has also shown that dewlaps can function  as inter-species recognition signals. It is expected that anole species that overlap with one another should have distinct dewlaps, in order to efficiently recognize conspecifics in multi-species communities. Prates addressed this hypothesis by examining the dewlaps of other species of anoles that are sympatric with A. fuscoauratus, and assessing whether dewlap variation might correlate with Anolis community composition. Prates found limited evidence for this hypothesis – for example, in areas where it co-occurs with A. tandai, a blue-dewlapped anole, A. fuscoauratus has a fewer gray-dewlapped populations, which are more similar to blue than the yellow or pink morphs. However, Prates also found that even in sympatry with other yellow-dewlapped species, A. fuscoauratus does not have a reduction in yellow- or white-dewlapped populations.

So what is driving this dewlap diversity? So far, there’s no smoking gun, but a few suggestions come from the data. Prates plans to continue working on this question by digging deeper on both genetic and environmental scales. Stay tuned!

Evolution 2019: Comparative Landscape Genetics and Epigenetics in Anolis Lizards

The field of landscape genetics seeks to understand how patterns of genetic diversity vary across a landscape. But an organism’s traits are not just determined by their genome – they are also impacted by processes that affect the way the genome is expressed. The study of such mechanisms (i.e. heritable non-genetically based gene expression) is known as epigenetics, and has become a topic of great interested to evolutionary biologists who aim to understand the processes by which phenotypes change over time and space. Non-genetically based phenotypes can be the targets of selection, can impact the plasticity of traits in different environments, and more.

Understanding the impact of epigenetics on evolutionary processes is difficult, because it is hard to disentangle the genetic and epigenetic effects on phenotypes. Of course, epigenetics are not independent from the underlying genetic code – the genes that are expressed are a part of the genome after all. Thus because populations differ in genetic structure, it is difficult to determine whether differences in phenotypes across populations are driven by genetic changes, or epigenetic changes. To understand the influence of epigenetic changes on phenotypes, it is necessary to “subtract” the effects of the underlying genetic variation.

Ian Wang decided to tackle this problem using a well-studied Anolis species, A. cristatellus. Wang is interested in understanding what factors drive epigenetic patterns; but before understanding the factors involved, it is first necessary to describe the patterns. Wang chose to focus on A. cristatellus because it is distributed widely and throughout various environments on the island of Puerto Rico, and is therefore a good candidate for understanding how populations diverge across geographic regions (i.e. isolation by distance) and in different habitats (i.e. isolation by environment).

Wang and colleagues collected tissues from 8 localities, some of which were located in the xeric southwest, and some of which were located in the mesic interior. He performed RRBS sequencing,  which captures information about methylated regions of DNA, and therefore provides information on variation in gene expression across populations (i.e. epigenetic variation). He also performed ddRAD sequencing, which captures information about genetic differences across populations (i.e. genetic variation).

In analyzing these two complementary datasets, Wang found that epigenetic and genetic distances were correlated between populations – that is to say, populations with high genetic divergence also had high epigenetic divergence. Recall that epigenetics are to not wholly independent from genetics, so this result is expected. However, each of these two types of variation – genetic and epigenetic – were also influenced by other factors.

In terms of genetic divergence, geographic distance was the strongest correlate – populations that were close to one another were more similar than populations that were further away. Interestingly, temperature and vegetation also appeared to play a role as well. In terms of epigenetic divergence, genetic distance (as represented by Fst) was the strongest predictor. Interestingly, however, vegetation was also a strong predictor as well. This suggests that on top of the genetic changes that accumulate when populations diverge, additional epigenetic shifts have also occurred, and are likely impacting the populations’ fitness in their respective environments.

These results highlight the importance of considering both genetic and epigenetic changes in studies of adaptive variation. Genomes alone may not explain the whole story! Wang is continuing this research in multiple avenues, including  comparing results across species (e.g. comparing results from A. cristatellus to another trunk ground anole, A. cybotes on Hispaniola), and digging deeper into the functions of individual outlier loci from the RRBS sequencing. Looking forward to hearing more about this emerging perspective on adaptation in anoles!

 

Evolution 2019: Sex-Specific Mortality and Senescence in a Population of Brown Anole Lizards

Dr. Aaron Reedy presenting at Evolution 2019.

Aging theory predicts that organisms will age faster when the probability of survival to old age is low. As a result, males and females of a species may age at distinct rates if they experience different rates of mortality due to environmental factors. Postdoctoral researcher Dr. Aaron Reedy (Auburn University) and colleagues tested this idea by performing a mark-recapture study of introduced Anolis sagrei in the small Island H in Florida, an island that is approximately the size of a baseball field.

Location of island H in Florida.

The team tracked 6,591 individuals of A. sagrei from hatchling to death through a near-complete sampling of the population four times a year between 2015 and 2019 (!!). The research group measured the body condition of individuals based on the residuals of mass on body length and estimated the rate of aging based on chromosomal telomere length from real-time qPCR.

The results suggest that males have higher mortality and shorter lifespans than females; most males die within two years, while females can live up to three and even four years. The study also found that males suffer a decline in body condition with age that females don’t seem to – Aaron even mentioned that he is often capable of predicting how old a male individual is based on how haggard it looks! Preliminary data suggests no statistical differences in telomere length between males and females, although there seems to be a trend of decreasing telomere length with age in males only.

Male brown anole.

In conclusion, Dr. Reedy and colleagues found that males have increased mortality and shorter lifespans than females, but it is unclear whether males senesce more rapidly. The next steps of this investigation will include longitudinal studies in both the field and lab to follow how fast single individuals age over their lifetimes.

You can check his poster on Aaron’s website.

Evolution 2019: Urbanization Across the Radiation

Anoles throughout the Caribbean are found in urban environments and differ in the extent to which they utilize anthropogenic habitats. There is strong phylogenetic signal in urban tolerance but is not correlated with ecomorphology of anole species. Previous work by Dr. Kristin Winchell (currently a postdoctoral researcher at Washington University in St. Louis with Dr. Jonathan Losos) and collaborators  showed that Anolis cristatellus commonly uses anthropogenic perches (e.g.- buildings and fences) in urban habitats, and that A. cristatellus has repeatedly adapted to urban environments. Urban A. cristatellus have longer limbs and greater numbers of lamellae when compared to their more rural counterparts, a pattern that is repeated island-wide.

With the prediction that species within the same ecomorph class would adapt to urban environments similarly, sampling has begun with four species from the Greater Antilles. Three species belong to the trunk-ground ecomorph (Anolis cybotes, Anolis lineatopus, and Anolis sagrei) and one trunk-crown species (Anolis grahami). In the Bahamas, examining Anolis sagrei she found significant shifts in relative limb length but in the opposite direction as seen in A. cristatellus. Meaning that urban A. sagrei have relatively shorter limbs, but it is worth noting that they have longer absolute limb length along with larger body sizes. Preliminary analyses of Anolis cybotes (Dominican Republic) and Anolis grahami (Jamaica), suggest shifts in relative and absolute limb lengths consistent with the morphological differences found in urban A. cristatellus. In Anolis lineatopus, the suggested shifts in relative and absolute limb length are consistent with those shifts seen in A. sagrei.

Additionally, Kristin had all of us at the conference beat when it came to attire. Her Anolis lineatopus dress that she designed the art work for was spectacular. If you are interested in her Anolis and urban stickers and art– check out her work on RedBubble— all proceeds from her art goes to printing more stickers for outreach purposes in the communities she does her field research in.

Excellent job Kristin and we are all looking forward to learning more about this work!

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