Macroevolutionary methods in R workshop in Santa Barbara, CA June 11-15, 2012

If you’ve read papers published over the last few years on Anolis diversification, you’ve likely noticed a common pattern: the papers present sophisticated analyses of macroevolutionary patterns that were conducted in R (for instance: 1, 2, and see this teaser for the promise of R with GIS data).  If you’ve contemplated how to introduce yourself to R and get over the initial hurdles of writing code for your own research, opportunity is-a-knock’n.

Co-organizer Luke Harmon invites you to apply to the 2012 Workshop on Comparative Methods in R today!

Over the last few years, Michael Alfaro and Luke Harmon have organized a wonderful workshop on macroevolutionary methods in the R programming language for statistical computing.  They’ve just released the application for this year’s course.  I had the privilege of attending last year and found it to be an enriching experience on several fronts.

Anolis equestris in south Florida

This young Anolis equestris was enjoying the recent bloom of a royal palm here in south Florida. After the freeze in 2010 there was a sharp decline in Anolis equestris (kill rate perhaps as high as 80%). The Iguana iguana population declined by 95% or more (so much for the “invasive invasion”). What has resulted from this die-off is that now I see many more of these young A. equestris. This particular specimen most likely hatched out last spring, there is also a smaller sized batch that must have hatched out in the fall. This staggered series of young animals is something I had not observed previously. Adult Anolis equestris (particularly the males) are notorious cannibals and young equestris are much slower and less agile than A. sagrei, A. porcatus, and A. distichus which often elude the sprinting attacks of equestris.

 There have been a number of citations of equestris eating birds and small rodents. Anolis equestris are opportunistic predators and will undoubtedly take fledglings if possible. I have seen mocking birds chase equestris from trees because they see them as threats, however, their fabled predatory exploits have been largely exaggerated. For nearly forty years I have made numerous field observations of A. equestris in south Florida. What I have found is that they spend their time much like their smaller anolis counterparts snapping up small arthropods. In fact, a fair proportion of their food intake isn’t even animal matter;

Indirect Mutualism Between Green Anoles and Dogs

Brown anole from Dust Tracks on the Web

Darwin famously pointed out that a surfeit of cats could lead to an abundance of flowers.  Janson Jones has transplanted that way of thinking to our favorite study organism, arguing that a population burst in green anoles in Florida is due to an influx of little dogs, whose ceaseless yapping and running amok has knocked brown anoles off their game, allowing the greens to proliferate. Read all about it here.

Animals and/or insects have a very weird yet amazing relationship with each other. Most of the time, a species will be wiped out without the other. When we think of our dogs, we often think about getting them the best life they can have, and we end up buying stuff from www.treehousepuppies.com or from our local pet shops. But nature does not operate that way, instead, it lets the animals and insects fend for themselves with the help of others.

And here’s what Darwin had to say:

Humble bees alone visit red clover, as other bees cannot reach the nectar. It has been suggested that moths may fertilise the clovers; but I doubt whether they could do so in the case of the red clover, from their weight not being sufficient to depress the wing petals.

Hence we may infer as highly probable that, if the whole genus of humble-bees became extinct or very rare in England, the heartsease and red clover would become very rare, or wholly disappear. The number of humble-bees in any district depends in a great measure upon the number of field-mice, which destroy their combs and nests; and Colonel Newman, who has long attended to the habits of humble-bees, believes that “more than two-thirds of them are thus destroyed all over England.”

Now the number of mice is largely dependent, as every one knows, on the number of cats; and Colonel Newman says, “Near villages and small towns I have found the nests of humble-bees more numerous than elsewhere, which I attribute to the number of cats that destroy the mice.” Hence it is quite credible that the presence of a feline animal in large numbers in a district might determine, through the intervention first of mice and then of bees, the frequency of certain flowers in that district!

Question about the Dewlap of Anolis insignis.

In 1923 Thomas Barbour described the species Diaphoranolis brooksi, a species that is currently considered conspecific with Anolis insignis. Apparently, his main reason for recognizing Diaphoranolis as a genus separate from Anolis was the structure of the gular appendage (dewlap), which he judged to be non-extensible. I’m wondering if any of you anolologists who have experience with Anolis insignis have examined the dewlap of that species and can refute or confirm Barbour’s conclusion (or otherwise comment on it). Thanks.

The Bay Islands And Cayos Cochinos Of Honduras: Endless Potential For Future Anole Research

The Bay Islands proper consist of a crescent of four land-bridge islands lying approximately 50 km off the northern coast of Honduras in the Caribbean Sea.  About halfway between those islands and the coast lies a smaller sub-archipelago, known as the Cayos Cochinos (or ‘Hog Islands’), which consist of two larger islands (Cayo Mayor and Cayo Menor) and 13 smaller cays (see the map below).  The Cayos Cochinos are famous in the commercial reptile trade for their endemic populations of insular-dwarf ‘pink’ boa constrictors.

The Bay Islands and Cayos Cochinos of Honduras. For scale, Cayo Menor and Cayo Mayor are about 3 km apart. Adapted from Green (2010).

I’ve had the pleasure of conducting herpetological research in the Bay Islands since 2007 thanks to support from a UK-based conservation organization called Operation Wallacea, and a generous team of researchers (Chad Montgomery, Bob Reed, Scott Boback, Steve Green, and Tony Frazier) that have been working on the boa and Ctenosaura populations there for several years, and were nice enough to get me involved.  And while the Bay Islands have gained some notoriety for their exotic snakes, another local squamate has gone (almost) entirely unnoticed.  I’m alluding to, of course, the anoles.  In 2007, when I was helping Chad Montgomery with his Ctenosaura melanosterna project on Cayo Menor, I began to notice just how abundant the anoles on that island were.  The little guys seemed to be on almost every tree in the interior of the island.  After asking around and doing a few literature searches, I started to realize just how untouched, and potentially interesting, this system really was.

Two anole species occur in the Cayos Cochinos, Anolis lemurinus and Anolis allisoni.

A Changing Climate – The Birth of Biophysical Ecology and Modern Reptile Thermobiology

Anolis armouri basking on a rock.

Our era of human-mediated climate change has brought startling new realities that we must face – ocean acidification, desertification, and receding ice caps, among others. For those of us who study lizards, one message is pervasive and clear – many species are being pushed to their thermal limit, and it is likely that many lizards, especially those that prefer cooler temperatures, won’t be able to take the heat. But, how do we know this? One of the main methods used to determine how reptiles will respond to climate change is to compare their preferred temperature (i.e., where lizards would like to keep their body temperature, given the option) to a random sampling of the thermal environment.

From a lizard’s eye view, though, the thermal environment is more complex than just air temperature. Lizards have volume, shape, and color, all of which affect their core temperature. Essentially, the operative temperature (Te) describes a lizard’s thermal environment as the sum total of many different interactions, such as radiation and convection, among others. Because it describes how temperature is shaped by everything except behavior and physiology, the operative temperature essentially describes how a perfect thermoconformer instantaneously perceives the environment. As such, it has been used as the null hypothesis for behavioral thermoregulation – if we can describe the thermal environment by recording Te, then we can use field-measured body temperature to determine the degree to which animals are thermoregulating. Here on the Anole Annals I’ve considered how devices have evolved to capture the operative temperature. The earliest prototype was a water-filled beer can, and we now have copper models painted to match the organism’s reflectance and HOBO devices.

Copper models of Anolis cybotes in the making.

But just where did these devices come from? I’ve been in Terre Haute, Indiana working with Dr. George Bakken at Indiana State University for the past two weeks making copper models of Anolis cybotes for my field research in the Dominican Republic. Dr. Bakken, along with Dr. David Gates, operationalized the term “operative temperature” for the ecological community in a seminal 1975 paper. I sat down with Dr. Bakken for an interview to learn how the intellectual climate promoted this and other important foundational works for biophysical ecology and reptilian thermobiology.

Sighting Of The Gray-Dewlapped Anolis Carolinensis

 

The fabled gray dewlapped anole. Photo by Harry Greene

Harry Greene and Jed Sparks lead a two week graduate field trip to Florida. While there, they espied the lizard shown above in the Corkscrew Swamp near Naples, FL. Here’s what Harry had to say: “Jed Sparks, the other instructor, initially said “green” after I’d told him to expect pink, and that was the first of the two we saw–I got only a glimpse of the partly protracted dewlap and no photos of that one. Second animal I got 3-4 images of separate dewlap expansions, and can say that through binos they looked pale green, but when I look at the images I see white scales and gray or green interscalar skin, not sure which! In any case, I can tell you almost exactly where I saw each of them, and they were on the same first half stretch of the ~2 mi boardwalk, in each case in well lit sites on the outer edge of swamp proper.”

Note that Macedonia in his 2003 paper referred to the dewlaps of these species as “greenish-gray.” Gray-dewlapped green anoles are known from southwestern Florida, but have been little studied. The seminal work is Macedonia’s aforementioned study, that concludes:

Sizing Up Green Anole Dewlaps

Several years ago I was involved in a study showing that the dewlaps of individual male green anoles change size over the course of a breeding season, increasing in area from winter to spring and then shrinking from spring to winter. This result was first noted in the field and verified in the lab, and is not a statistical artefact – individual dewlaps really do change size!

Shortly after that study appeared I found myself in Australia doing postdoc work on crickets. During that time I gained an appreciation for life-history and the battery of approaches, ranging from artificial diets to mating schedule manipulations, which researchers use to expose resource allocation priorities in animals. (On a related note, I also gained an allergy to crickets). When I returned to the lizard world I started thinking about dewlaps and resource allocation, and I wondered if it might be possible to apply some of these life-history techniques to anoles to figure out the mechanisms underlying the incredible growing/shrinking dewlaps.

It turns out that not only is it possible, it’s actually pretty easy, and my research group was recently able to conduct a simple dietary restriction experiment that yielded some unexpected results. We wanted to test whether dewlap size is affected by resource availability,

Is This Anolis Anoriensis?

asks reader Esteban Dominguez Vargas, who posted the photo on his Flickr page. For more on A. anoriensis, read here.

Water Loving Green Anoles

Photo by Janson Jones

We’ve previously discussed how green anoles, Anolis carolinensis, are much more terrestrial in areas where A. sagrei doesn’t occur. Janson Jones, who has written on this previously, now adds a new twist–at one sagrei-less site in Georgia, they’re frolicking around in the water lilies and other aquatic vegetation. Read all about it here.

That got me thinking. Maybe this is how the famed “aquatic” anoles evolve? First you hang out on weeds in the water, next you’re jumping in for a dip?

And speaking of anoles, not only do they float, but they can swim, even those that rarely, if ever, enter the water. I’ve inadvertantly put A. sagrei into the ocean a number of times (think lizard noosing malfunction), and they just press their legs against their body and swim by undulating their tail, alligator-style. Green anoles do that, too, and I’ll bet all anoles innately can swim. I wonder what would happen if you put a crown giant in water. Anyone want to try that with their pet in the bathtub? I bet they can swim, too. So, anoles are pre-adapted (exapted, if you will) for becoming adding aquatic habitats to their repertoire.

And that leads me to one more thought in this ramble: Carl Gans published an obscure paper (Locomotor responses of Calotes to water (Agamidae: Sauria). J. Bombay Natural History Society, vol. 74:361-363, 1977) years ago about some Asian agamid lizards (Calotes) that he dropped into a swimming pool. At first they swam as described above, but then started flailing their legs ineffectually. Eventually, their head would drop below the water, they would breathe in some water, sink to the bottom and then start walking around, presumably until they would have drowned if not rescued. Doesn’t seem like they have much of a future in adapting to aquatic habitats. Similarly, if you dunk a baby duck under water (not that I’ve ever done that), they hold their breath, but baby chickens try to breathe, and things don’t go well. Take home lesson: basic motor patterns and behaviors are needed if a species is to have any hope of adapting to a new habitat. If it doesn’t have the necessary prerequisites to survive there, they have no chance of adapting. (This is, more or less, the theme of another Gans paper I stumbled across when looking for the one mentioned above).

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