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JMIH 2016: Exploring Social Networks and Species Coexistence of Anolis lizards

Reptiles are often thought of as solitary and not social animals. However, all of us who study anoles know that Anolis are anything but solitary animals. Spend a few minutes observing an anole and you might see it dewlapping, doing push-ups, tail wagging, and fighting with other males or even other anoles species.  James Stroud, a Ph.D. candidate from the Feeley lab @ Florida International University, presented on Saturday about the exploratory results of a new research method he and Robert Heathcote have started to construct social networks of A. sagrei and A. cristatellus in Miami, Florida. A. sagrei and A. cristatellus are similar in morphology and ecology and they wanted to learn how patterns of social interactions between these two species allow them to coexist outside of their native range.IMG_20160709_152928392

IMG_20160709_153811103 IMG_20160709_153904300

Individual social behavior manifests itself collectively at the population level and interactions between populations (within and between species) might act as a basis for evolutionary processes. James and Robert tagged both male and female anoles in their study to track and recapture the animals in the future for a long term study. They measured the distance between every two anoles observed and inferred the strength of interaction as stronger if the anoles were closer to each other. Both species show a great web of interactions both within and between species. Some individuals are also much more “bold,” interacting with many males and females of either species, while others show fewer social interactions. These preliminary data are exciting since so little is known about Anolis social behavior. James also mentioned that they will be including additional data such as the types of interactions that will add great complexity and insight to this story.

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JMIH 2016: Malarial Infection Rates Greater in Anolis carolinensis than Anolis sagrei in Central Florida

Cells infected with P. floridense (left and right) vs. healthy cells (middle)

Cells infected with P. floridense (left and right) vs. healthy cells (middle)

Brian Devlin, a graduate student from University of Central Florida, presented a poster on differential rates of malarial infection by Plasmodium floridense between two Anolis species in Central Florida. While both species exist in the area, A. sagrei is the more recent invader. Brian hypothesized that the infection rate would be higher in A. sagrei because A. carolinensis has coexisted with the parasite longer and might have developed some resistance to it.

Brian collected blood samples from both species and examined the cells under the microscopes to look for signs of malarial infection.  He actually found that the infection rates of P. floridense were significantly greater in A. carolinensis. Infection rate also did not correlate with SVL, sex, presence of tail autonomy, date or locality of the lizard. However, there is a higher rate of infection in the warmer months (May-July) possibly due to the in increase rainfall resulting greater mosquito presence. From these results, Brian hypothesized that the lower malarial infection rates in A. sagrei might have helped the species to outcompete A. carolinensis and successfully establish in Florida.

Brian's poster

Brian’s poster

 

JMIH 2016: Herp League Graduate Student Award Winner: Urban Habitat Partitioning by Two Common Species of Puerto Rican Anolis

Kristin Winchell, my fellow lab mate at the Revell lab, presented her work on the habitat use of two urban dwellers in Puerto Rico. Past studies have shown that Anolis cristatellus and Anolis stratulus vary in abundances and use different portions of the natural habitat. As early as 1964, Rand showed that A. stratulus was less abundant and perched higher on trees in forest habitat. Picture1However, we know very little about whether these patterns are maintained in urban areas where species have access to novel manmade structures. To address this, Kristin evaluated the habitat use of these two species across seven urban replicates and contrasted it to the available habitat. She found that urban A. stratulus uses more isolated perches with greater vegetative canopy and perches at higher portions of the habitat. Anolis cristatellus uses perches that are less isolated, shaded mostly by manmade canopy (i.e. buildings and houses) and at lower heights. When examining these patterns in a multidimensional space, she showed that A. cristatellus has expanded its urban niche through the use of manmade structures, while A. stratulus uses a subset of the natural portion of the habitat that A. cristatellus also uses.

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Her research shows that these two urban dwellers interact with the novel portions of the habitat differently. Anolis cristellus has expanded its niche towards manmade structures which has implications for adaptation to enhance stability and locomotion when using these structures as shown in some of her previous work (Winchell, et al, 2016).  Anolis stratulus uses the less available remnants of the natural habitat which may have implication for conservation if they become sparser as urbanization expands.

JMIH 2016: Comparative Phylogeography of Three Widespread Anolis species across the Puerto Rico Bank

Alexandra Herrera presented on using genetic population structure to understand how geographical processes have shaped genetic isolation of three widespread Anolis species on the Puerto Rican Bank. Geographical processes are an important event in shaping current populations and can lead to interesting patterns of diversification. However, these processes may not necessarily affect species similarly. In this study, Alexandra used a combination of nuclear genes and one mitochondrial gene to examine the population structure of these three anoles.

Evidence strongly suggests that populations of Anolis pulchellus were separated into two major clades through the formation of mountains. These two clades are made up of one cluster from south Puerto Rico and a cluster that includes both Northeast Puerto Rico and the Virgin Islands.

20160708_144935The diversification of the other two species corresponds with tectonic and sea level changes. For Anolis stratulus, divergence between populations in PR, Culebra, Vieques and the Virgins Islands occurred at the end of the Pliocene after the formation of the Virgin Passage.  These populations formed five clusters east PR, south PR, Virgin Islands, Vieques-Culebra and Peter-Norman islands.

20160708_145223For Anolis cristatellus the divergence between east PR and south PR with the Virgin Islands was estimated around the late Miocene-Pliocene transition when the Mona and Virgin Island passages formed. These populations formed 4 clusters east PR, south PR,  Virgin Islands and Carrot Rock-Peter-Culebra-Piñeiro.

20160708_145426This research shows that each species had a different diversification pattern and that they all occurred around the middle of late Pleistocene. Furthermore, geographical processes may affect species differently, leading to various patterns of population structures.

 

 

JMIH 2016: The Effect of Incubation Moisture on Desiccation Rate

Corey Cates, a PhD student in the Warner Lab presented his latest
results on desiccation tolerance in Anolis sagrei. Desiccation tolerance
is resistance to water loss and is crucial for lizards especially in dry
habitats. Lizards have parchment-shell eggs that take up water from
the environment during incubation. Corey used two incubation conditions to
test whether desiccation tolerance changes throughout the lifetime of
a lizard and whether incubation moisture has an effect on desiccation
tolerance. His study site consists of four islands within the Tomoka River
in Tomoka State Park, Florida. Two of them
have little vegetation, arid climate and lizards lay their eggs in
dry substrate that consists of shells and rocks. The other two islands
have more vegetation cover, cooler climate and moist dark soil to
incubate the eggs. Corey collected individuals from all
islands and incubated their eggs under dry and wet conditions. He
found that desiccation tolerance is highly plastic: hatchlings that
were incubated under dry conditions show low desiccation rates,

matching rates for naturally incubated individuals.

Experimentally incubated individuals match desiccation rates of individuals sampled in the field

Experimentally incubated individuals match desiccation rates of individuals sampled in the field

He also found that desiccation rates decrease within the lifetime of an individual.

Desiccation rates decrease after releasing hatchlings on experimental islands

Desiccation rates decreased after hatchlings were released on experimental islands

He then released the hatchlings to measure survival. He found that desiccation rates are adaptive: individuals incubated under humid conditions had higher survival on mesic islands, and dry incubated individuals had higher survival on arid islands. Future research will focus on exploring the physiological mechanisms that lead to differences in desiccation tolerance, such as scale number and scale size. He will be continuing complementary research during his dissertation work to further explore the effects of incubation moisture on lizard phenotypes.

JMIH 2016: Evolution Isn’t Slow–Experimental Studies of Eco-Evolutionary Dynamics

For many years, biologists believed that evolution was a process that played out over vast stretches of geological time and would not be observable during field studies. More recent research, however, has begun to show that evolution can occur very quickly and that experiments in the field can address evolution in action. Tom Schoener, eminent professor at the University of California, Davis, shed light on our evolving view of how evolution occurs in his talk, “Eco-evolutionary Aspects of the Lizard Anolis sagrei in an Island Metapopulation” at JMIH 2016.

By introducing a novel predator, the curly-tailed lizard (Leiocephalus carinatus), which devours anoles, to a series of small islands in the Bahamas, Schoener and colleagues were able to observe evolutionary responses in A. sagrei in fewer than 10 years. By preying on A. sagrei, curly-tailed lizards induced behavioral changes in perch height, and created selection for relatively longer limbs that increase anoles’ ability to escape this predator. Curly-tailed lizards also caused a variety of ecological effects, including reducing anole populations and changing arthropod abundance, which may affect the future evolution of anoles on these islands. Ongoing monitoring shows that these anole populations seem to be rebounding and that different types of selection may be acting on hindlimb length.

A curly-tailed lizard (Leiocephalus carinatus) displays its namesake in Florida. Photo: Ianaré Sévi.

A curly-tailed lizard (Leiocephalus carinatus) displays its namesake in Florida. Photo by Ianaré Sévi.

Perhaps not surprisingly, many of the experimental islands were occasionally devastated by hurricanes which are becoming more frequent and more powerful in the Caribbean. While these extreme weather events interrupted some of Schoener’s planned research, they also provided a unique opportunity to study how hurricanes may cause natural selection. Schoener found that anoles which survived hurricanes had longer hindlimbs, and these lizards were better able to hold onto trees and other perches at high wind speeds, likely increasing survival of hurricanes by preventing lizards being blown out to sea! Taken together this body of research suggests that novel environmental changes, such as invasive species or increasingly extreme weather, exert selection on organisms and that we can observe these organisms evolving rapidly on ecological timescales.

JMIH 2016: Late-season Lizards Hatch More Quickly and Run Faster

Previous research in the Warner lab has shown that temperature during egg development influences fitness and performance in Anolis sagrei. In particular, a warmer incubation temperature increases sprint speed. The breeding season of A. sagrei spans from March through October, with lower temperatures early in the season and higher temperatures late in the season. Phil Pearson, a masters student in the Warner Lab, conducted an experiment to test whether embryos are developmentally adapted to their incubation temperature. He collected eggs from two temporally-separated cohorts and incubated them under two different temperatures, simulating seasonal temperature differences. He found that late season hatchlings had higher egg survival when incubated under late season temperature. Regardless of incubation temperature, late season embryos had higher sprint speed, larger body size and longer tails. This might compensate for the late start, since they are competing with early cohort individuals in the population.

Late season hatchlings have higher sprint speed regardless of incubation temperature

Late season hatchlings have higher sprint speed regardless of incubation temperature

Overall, this suggests that timing of oviposition has greater effect on morphology and performance than incubation temperature. Future analysis will show whether timing of oviposition affects survival. Phil released the hatchlings on small islands to measure fitness using a mark-recapture approach and will hopefully present his findings at future meetings.

 

JMIH 2016: Jonathan Losos, Distinguished Herpetologist

JMIH

The Joint Meeting of Ichthyologists and Herpetologists (JMIH) kicked off here in New Orleans yesterday. In the morning, Jonathan Losos got started with the first of many anole themed talks. Jonathan gave one the plenary addresses as the Herpetologists’ League’s “Distinguished Herpetologist” of 2016. As such, he joins a long list of accomplished herpetologists, including the first recipient of the honor in 1981, the great anole biologist (and Jonathan’s undergraduate advisor) Ernest E. Williams.

In Jonathan’s talk entitled “Known knowns and unknown unknowns: herpetological progress in fits and starts”, Jonathan started by paying homage to Ernest Williams. He managed to find slides from Ernest’s 1981 plenary address in which the perception at the time of anole biology was compared to a well-built building. All there was to know about anoles was known… or so people thought. In reality, the building looked more like this:

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E.E. Williams slide on the state of anole knowledge from 1981

The metaphorical building at the time was in fact only partially built, with bits and pieces of different areas more complete than others. Jonathan’s talk focused on the fact that despite over 3 decades of progress, so much is still unknown about anoles, including basic natural history of many species. And so Jonathan shared with us a few stories highlighting some surprising anole findings and remaining unknowns, featuring the work of his students from the past 20 years:

Genetic diversity:
One surprise finding over the past 30 years is that several anole species have deep 2016-07-07 11.07.29mitochondrial splits. Anolis oculatus, for example, on the tiny island of Dominica has 4 distinct lineages with as great as 10% mtDNA divergence (Malhotra and Thorpe 2000)! And they aren’t the only ones. Rich Glor and Jason Kolbe really broke this story open with their analysis of several anole species showing multiple mitochondrial lineages for each (Kolbe et al. 2007). This brings into question our estimates of diversity. If every species is actually 4+ species, have we underestimated diversity?

New Species:
According to Jonathan, it seems that the “dawn of anole discovery” peaked in the 1970’s – the last very distinctly different anole was discovered nearly 40 years ago. And yet just last month, Luke Mahler et al. published a record of a new species of anole discovered on the island of Hispaniola! Hispaniola has been intensely studied by anole biologists, making this all the more surprising. In honor of the naturalist that found the species in the wild, the authors named the new species Anolis landestoyi. This new species has a striking appearance, similar to a chameleon and to the Cuban “false chameleons” (Chamaeleolis clade of anoles), and brings up the question of whether there might be a seventh ecomorph.

Anolis landestoyi, photo by D. Luke Mahler

Anolis landestoyi, photo by D. Luke Mahler

Territoriality:
Highlighting the work of two other Losos Lab members, Alexis Harrison and Ambika Kamath, Jonathan talked about how little we know abut anole territoriality. Conventional knowledge says that males maintain polygynous territories and don’t move too far. But Ambika has shown in her dissertation work that male Anolis sagrei actually move quite a bit, and Alexis has shown that male Anolis carolinensis mate with females on opposite sides of their site, not just nearby females! In general, Jonathan commented that there is a large amount of work to be done still on social behavior in anoles.

Anolis proboscis (photo by Luke Mahler)

Anolis proboscis (photo by Luke Mahler)

Basic Biology:
Jonathan talked about the Anole Annals darling, Anolis proboscis. This understudied species sports a large nasal projection of unknown purpose. This odd species was thought to be extinct for many years until it was “rediscovered” only a few years ago. While sexual selection seems like an obvious cause of this structure (the females do not possess horns), its not clear what the males use it for. The obvious hypothesis, that it is used for male-male combat, is easily refuted by video demonstrating that this structure bends easily. Moreover, it appears that they can bend the horn, as seen in this video! The mystery of this structure’s function remains unsolved.

Finally, Jonathan talked about an interesting anecdote: that Anolis agassizi from Malpelo island seems to have a strange preference for the color orange, as described by Rand et al. (1975). Jonathan described a recent test of this preference replicating the Chuckles candy experiment (the experiment has been described here on Anole Annals) and confirming that  this species does, in fact, prefer the colors orange and yellow when it comes to Chuckles candy. He also showed a video of A. agassizi swooping in from afar to eat (attack?) an orange. Why are they so attracted to this color? Sounds like a project waiting to happen.

In short, Jonathan emphasized these two main points:
1. Natural history information is key; you need to know basic aspects of biology and natural history to dig into the deeper questions.
2. There are so many questions to be answered about anoles still, and room for all who want to join the party.

 

 

Resolving Phylogenetic Uncertainty in Anoles Using Treescape

It’s an all-too-common situation: you would like to infer a phylogeny for a set of organisms, you try a few different methods and you end up with many different trees. Even with the most careful choice of software, settings, tree priors, and the most beautifully converged Bayesian posterior likelihood, you may find that the maximum clade credibility (MCC) tree has low posterior support for certain deep clades.

MCC tree with posterior supports

Anole MCC tree with posterior supports, from Geneva et al. [1]

Tree inference is very complicated, particularly for species trees, and is hampered by factors which include the vast size of tree space, conflicting signals from different genetic loci, confusing signals from convergent evolution, and non-tree-like evolution (recombination, hybridisation, etc.). Geneva et al. experienced just this sort of difficulty when they performed a comprehensive Bayesian phylogenetic analysis of the distichus group of trunk ecomorph anoles [1]. Their MCC tree is reproduced here, and the posterior support values show uncertainty in the branching structure of various deep clades. There are many combinations of ways to resolve these uncertain splits. We wanted to see which alternative trees were supported by the data.

In our recent paper [2] we present a method for handling phylogenetic uncertainty and incongruence. It takes a set of trees and “maps” them into a simple plot where similar trees are grouped together and more different trees are placed further apart. Where many similar trees are clustered together, contour lines indicate the density of points in that region. We began the development of our method theoretically, making sure we had designed a robust mathematical definition for tree distances which would correspond to biological intuition and lend itself to good quality map projections. Then, working closely with biologists, we fine-tuned our method for specific applications with real data and wrote the R package treescape [3] so that anyone can use it – there’s even a handy web app version which requires no knowledge of R.

treescape MDS plot: each point represents a tree, and proximity of points represents similarity of trees. 1000 trees are plotted here, many identical, so contour lines indicate density of points. Colours correspond to clusters of similar trees.

treescape MDS plot: each point represents a tree, and proximity of points represents similarity of trees. 1000 trees are plotted here, many of which are identical, so contour lines indicate the density of points. Colours correspond to clusters of similar trees.

When we applied our method to the trees from the analysis of Geneva et al. [4], we found that there were distinct “clusters” of equally likely tree topologies. It is reassuring that the MCC tree belongs to the largest of these clusters (highlighted on the plot by a yellow triangle), but clearly it cannot represent all of the likely tree shapes on its own. By taking a representative tree from each of the six or so tight clusters, we obtain a more thorough summary of the range of trees supported by the analysis. Such representative trees, taken from the geometric “centre” of each cluster, are credible summary trees with real branch lengths, unlike trees from other summary methods which can suffer from strange behaviour such as negative branch lengths.

We find that there are alternative placements of certain taxa, particularly the ocior, distichus, dominicensis2 clade, and (in our supplement) we explore some of the knock-on effects of using these different tree shapes when analysing the evolution of the anoles, specifically their geographical origins and transitions in their dewlap colour. For instance, we show here a representative tree from each of two different clusters on the map. The trees support ocior, distichus, and dominicensis2 being more closely related to anoles from the East of Hispaniola (the North paleo-island) or the South-West (the South paleo-island) respectively. Both evolutionary histories are supported by the data; in the absence of further research, there is no reason to exclude any of the alternative representative trees identified by our method.

Representative tree from top left cluster

Representative tree from top left cluster

Representative tree from top right cluster

Representative tree from top right cluster

 

 

 

 

 

 

 

 

[1] Geneva, A. J., Hilton, J., Noll, S. and Glor, R. E. (2015). Multilocus phylogenetic analyses of Hispaniolan and Bahamian trunk anoles (distichus species group). Molecular Phylogenetics and Evolution, 87:105-117.

[2] Kendall, M. and Colijn, C. (2016) Mapping phylogenetic trees to reveal distinct patterns of evolution. Molecular Biology and Evolution, first published online June 24, 2016. DOI: 10.1093/molbev/msw124

[3] Jombart T., Kendall M., Almagro-Garcia J., Colijn C. (2015). treescape: statistical exploration of landscapes of phylogenetic trees. R package version 1.9.17.

[4] Geneva A. J., Hilton J., Noll, S. and Glor, R. E. (2015). Data from: Multilocus phylogenetic analyses of Hispaniolan and Bahamian trunk anoles (distichus species group). Dryad Digital Repository.

Anole Hunting in Southern Nicaragua

Fig. 1 Anolis cupreus

Figure 1. Anolis cupreus.

Spending two weeks searching for amphibians and reptiles along Nicaragua’s southern border proved very successful for a band of nature enthusiasts. Accompanied by my primatologist wife Barbara, fellow herpetologist, Joe Furman and his daughter Sadie, and our expert guide Lenin, we visited several nature reserves hoping to observe as many species of herps as possible. Our journey began in Ticuantepe, at the Montebelli Reserve, where we spent our first night searching the forest for any creatures that were out and about. The rainy season had not yet begun and the lack of rain resulted in a paucity of herpetological sightings. We did manage to find a few frogs (Smilisca baudinii and Scinax staufferi), a small fossorial snake (Enulius flavitorques), as well as a sleeping Copper Anole, Anolis cupreus (Fig. 1). Our stay here was brief and the following day we were on our way to the Ecological Center of Los Guatuzos, near the town of Papaturro.

Fig. 2 Anolis limifrons

Figure 2. Anolis limifrons.

The forests here were much more expansive and bordered the Papaturro River. and as a result the abundance of amphibians and reptiles was significantly greater. The river, which ran immediately in front of our accommodations, contained large numbers of Spectacled Caimans (Caiman crocodilus), ranging from yearling size to two meter long adults. At night their glowing orange eyes could clearly be seen scattered throughout the waterway like dim headlights on a busy thoroughfare. On our first night’s outing we observed more than a dozen species of amphibians and reptiles including the iconic Red-eyed Treefrog (Agalychnis callidryas), Fleischmann’s Glass Frog (Hyalinobatrachium fleischmanni) , the giant Smoky Jungle Frog (Leptodactylus pentadactylus), Clouded Snail-eating Snake (Sibon nebulatus), and two species of anoles: Slender (Anolis limifrons  Fig 2.), and the Neotropical Green Anole (Anolis biporcatus  Fig 3.).

Fig. 3 Anolis biporcatus

Figure 3. Anolis biporcatus.

Fig. 4 unidentified white anole

Figure 4. ???.

The following night we came upon an almost white-colored male anole (Fig. 4) sleeping on a leaf some two meters above the ground that we couldn’t readily identify. We realize that many anole species have different body color and patterns at night than they do during the day, so we decided to check the dewlap to see if that might help us render a positive identification. The dewlap was mostly light in coloration with several dark green spots scattered throughout (Fig. 5). Despite this characteristic coloration, the species remained unknown to us.

Fig. 5 dewlap of unidentified white anole

Figure 5. Dewlap of unidentified white anole in Fig. 4.

Figure 6. Second unidentified white anole.

Figure 6. Second unidentified white anole.

Fig. 7 dewlap of second unidentified anole

Figure. 7 dewlap of second unidentified anole.

Shortly after finding this anole, another unidentified white anole was observed (Fig. 6) however, this one had a bright orange-colored dewlap (Fig. 7).

Our final destination took us up the Rio Bartola to the Reserva Naturale Indio Maiz. Like our previous sites this one had large, expansive forests with no other visitors anywhere in the vicinity. Fortunately, the rains had now begun and we were treated to a greater diversity of wildlife including more than two dozen species of amphibians and reptiles. Perhaps due to the onset of the rains or maybe because this reserve is naturally abundant in snake fauna, we ended up seeing more than a dozen serpents in just a few days time. Most notable among them was the seldom seen White-headed Snake, or Panda Bear Snake (Enuliophis sclateri  Fig 8), a small fossorial species known from only four other individuals from Nicaragua.

Figure 8 Enuliophis sclateri, White-headed Snake

Figure 8 Enuliophis sclateri, White-headed Snake

Figure 9. Anolis capito

Six species of anoles were found here including the mossy-looking Anolis capito (Fig. 9), the Slender Anole (Anolis limifrons), the Lion Anole (Anolis lionotus  Fig. 10), of which several were observed during the day on rocks in a shallow stream as well as at night on thin branches overhanging the waterways, a species we were unfamiliar with but which our guide identified as Anolis  quaggulus (Fig 11).

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