
Anolis carolinensis (http://www.birderslounge.com/2008/07/green-anole-amore/), A. marmoratus (from willy.ramaekers flickr: http://www.flickr.com/photos/27048739@N02/), Polychrus marmoratus (from Pierson Hills flickr: http://www.flickr.com/photos/nclarkii/), chickens (from http://ww.animalpicturesarchive.com/)
New primers for sequencing nuclear loci from Anolis!
Availability of genomic loci for sequencing has long been a major stumbling block to evolutionary inference in non-model taxa. In anoles, for example, several decades of work relied almost exclusively on mitochondrial DNA. As part of the Anole genome sequencing initiative, my lab group collaborated with the Broad Institute to identify conserved primers that can be used to amplify nuclear loci from across Anolis. We ultimately tested 200+ primer pairs, most of which were identified by comparing the genome of Anolis carolinensis to genomic data from two related lizards (Anolis marmoratus and Polychrus marmoratus) and the chicken (others came from recent work in the Jackman lab).
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